docs: remove stale format_version and branch field refs from docstrings
- verify.py: drop '(format_version >= 7)' caveat — guard removed in Phase 4 - read_commit.py: update example output, --fields examples, and run() docstring - commit-id-v2-rewrite.md: mark Phases 3 and 4 as done
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5 — format_version schema versioning field
section 5 — format_version schema versioning field L27–33
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6 — branch field semantics are misleading
section 6 — branch field semantics are misleading L33–38
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7 — Legacy object store paths (no algo directory)
section 7 — Legacy object store paths (no algo directory) L38–47
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Step 4 — Topological sort (Kahn's algorithm)
section Step 4 — Topological sort (Kahn's algorithm) L174–178
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Step 8 — Migrate legacy object paths (Part B)
section Step 8 — Migrate legacy object paths (Part B) L196–208
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